It works fine with the RIGHT header. If you have a header that was for your carbed 4.2, it may or may not fit. The flange may interfere with the mounting of the EFI intake. If you really want to see the full potential of the EFI kit however, do yourself a favor and pick up a '92 to '95 4.0L cylinder head and install it in place of your 4.2 head. Of course if you do this, you'll have to replace your header with one made for a 4.0. Borla makes a great one. Check out Tim's 4.0L head conversion write-up on the subject. From what I've seen and heard, the new head makes a world of difference and lets the EFI work even better. Since you'll have the whole thing apart anyway, why not... it's only a few bucks at the wrecking yard, just make sure you pick a good one (for a few bucks, a machine shop should be able to perform a thorough check for you). Good luck, and let us know how it goes.
-Spyder
-Spyder