the only problem you will have is with the tailgate part.. i have a yj top with cj tailgate.. you can turn that rear bar around and use it.. but i found it to be a pain in the ass.. so i took it off.. and it still works just fine without it..
If you're looking for a soft top, I have a YJ style one for my CJ that I am going to sell. It's in great shape. The rear window zipper on one side has some stiching undone, but other than that it's perfect. Lemme know if you're interested.